Can the discoloration be removed by cleaning with a solvent (such as acetone), i.e. dip a 'Q-tip' in acetone and try to rub off the discolored area.
Since gold is essentially chemically unreactive in ordinary environments, my suspicion is that the discoloration is coming from an as yet unknown source. For example, trace amounts of plasticizers can be leached out of plastic tubing when such tubing is used to transport nitrogen gases from tanks and connected to instruments or chambers.
I need a little more information, but this kind of 'systems analysis' will disclose the problem.
First, try to get a trace analysis as to the composition of the discoloration itself. An IR microscope may be the ideal instrument, especially if the discoloration cannot be readily cleaned off.
After some thought, I have submitted this second answer.
There has been much discussion lately that "no clean" is a misnomer. In fact, cleaning is generally still desireable ... In this case, a little more detective work (i.e. identify the composition of the discoloration) should provide the information needed to isolate the root cause and eliminate the problem.
Also, how good is the gold plating? Trace amounts of other more active metals can result in strange chemical effects.